dol.zipfiledol¶
Data object layers and other utils to work with zip files.
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class
dol.zipfiledol.
FileStreamsOfZip
(zip_file, prefix='', open_kws=None)[source]¶ Like FilesOfZip, but object returns are file streams instead. So you use it like this:
z = FileStreamsOfZip(rootdir) with z[relpath] as fp: ... # do stuff with fp, like fp.readlines() or such...
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class
dol.zipfiledol.
FlatZipFilesReader
(rootdir, subpath='.+\\.zip', pattern_for_field=None, max_levels=0, zip_reader=<class 'dol.zipfiledol.ZipReader'>, **zip_reader_kwargs)[source]¶ Read the union of the contents of multiple zip files. A local file reader whose keys are the zip filepaths of the rootdir and values are corresponding ZipReaders.
Example use case:
A remote data provider creates snapshots of whatever changed (modified files and new ones…) since the last snapshot, dumping snapshot zip files in a specic accessible location.
You make remote and local stores and can update your local. Then you can perform syncing actions such as:
missing_keys = remote.keys() - local.keys() local.update({k: remote[k] for k in missing_keys}) # downloads missing snapshots
The data will look something like this:
dump_folder/ 2021_09_11.zip 2021_09_12.zip 2021_09_13.zip etc.
both on remote and local.
What should then local do to use this data? Unzip and merge?
Well, one solution, provided through FlatZipFilesReader, is to not unzip at all, but instead, give you a store that provides you a view “as if you unzipped and merged”.
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class
dol.zipfiledol.
ZipFileStreamsReader
(rootdir, subpath='.+\\.zip', pattern_for_field=None, max_levels=0, *, zip_reader=<class 'dol.zipfiledol.FileStreamsOfZip'>, **zip_reader_kwargs)¶ Like ZipFilesReader, but objects returned are file streams instead.
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class
dol.zipfiledol.
ZipFilesReader
(rootdir, subpath='.+\\.zip', pattern_for_field=None, max_levels=0, zip_reader=<class 'dol.zipfiledol.ZipReader'>, **zip_reader_kwargs)[source]¶ A local file reader whose keys are the zip filepaths of the rootdir and values are corresponding ZipReaders.
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class
dol.zipfiledol.
ZipFilesReaderAndBytesWriter
(rootdir, subpath='.+\\.zip', pattern_for_field=None, max_levels=0, zip_reader=<class 'dol.zipfiledol.ZipReader'>, **zip_reader_kwargs)[source]¶ Like ZipFilesReader, but the ability to write bytes (assumed to be valid bytes of the zip format) to a key
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class
dol.zipfiledol.
ZipInfoReader
(zip_file, prefix='', open_kws=None, file_info_filt=None)[source]¶
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class
dol.zipfiledol.
ZipReader
(zip_file, prefix='', open_kws=None, file_info_filt=None)[source]¶ A KvReader to read the contents of a zip file. Provides a KV perspective of https://docs.python.org/3/library/zipfile.html
ZipReader
has two value categories: Directories and Files. Both categories are distinguishable by the keys, through the “ends with slash” convention.When a file, the value return is bytes, as usual.
When a directory, the value returned is a
ZipReader
itself, with all params the same, except for theprefix
which serves to specify the subfolder (that is, ``prefix` acts as a filter).
Note: If you get data zipped by a mac, you might get some junk along with it. Namely __MACOSX folders .DS_Store files. I won’t rant about it, since others have. But you might find it useful to remove them from view. One choice is to use dol.trans.filt_iter to get a filtered view of the zips contents. In most cases, this should do the job:
# applied to store instance or class: store = filt_iter(filt=lambda x: not x.startswith('__MACOSX') and '.DS_Store' not in x)(store)
Another option is just to remove these from the zip file once and for all. In unix-like systems:
zip -d filename.zip __MACOSX/\* zip -d filename.zip \*/.DS_Store
Examples:
# >>> s = ZipReader('/path/to/some_zip_file.zip') # >>> len(s) # 53432 # >>> list(s)[:3] # the first 3 elements (well... their keys) # ['odir/', 'odir/app/', 'odir/app/data/'] # >>> list(s)[-3:] # the last 3 elements (well... their keys) # ['odir/app/data/audio/d/1574287049078391/m/Ctor.json', # 'odir/app/data/audio/d/1574287049078391/m/intensity.json', # 'odir/app/data/run/status.json'] # >>> # getting a file (note that by default, you get bytes, so need to decode) # >>> s['odir/app/data/run/status.json'].decode() # b'{"test_phase_number": 9, "test_phase": "TestActions.IGNORE_TEST", "session_id": 0}' # >>> # when you ask for the contents for a key that's a directory, # >>> # you get a ZipReader filtered for that prefix: # >>> s['odir/app/data/audio/'] # ZipReader('/path/to/some_zip_file.zip', 'odir/app/data/audio/', {}, <function take_everything at 0x1538999e0>) # >>> # Often, you only want files (not directories) # >>> # You can filter directories out using the file_info_filt argument # >>> s = ZipReader('/path/to/some_zip_file.zip', file_info_filt=ZipReader.FILES_ONLY) # >>> len(s) # compare to the 53432 above, that contained dirs too # 53280 # >>> list(s)[:3] # first 3 keys are all files now # ['odir/app/data/plc/d/1574304926795633/d/1574305026895702', # 'odir/app/data/plc/d/1574304926795633/d/1574305276853053', # 'odir/app/data/plc/d/1574304926795633/d/1574305159343326'] # >>> # >>> # ZipReader.FILES_ONLY and ZipReader.DIRS_ONLY are just convenience filt functions # >>> # Really, you can provide any custom one yourself. # >>> # This filter function should take a ZipInfo object, and return True or False. # >>> # (https://docs.python.org/3/library/zipfile.html#zipfile.ZipInfo) # >>> # >>> import re # >>> p = re.compile('audio.*\.json$') # >>> my_filt_func = lambda fileinfo: bool(p.search(fileinfo.filename)) # >>> s = ZipReader('/Users/twhalen/Downloads/2019_11_21.zip', file_info_filt=my_filt_func) # >>> len(s) # 48 # >>> list(s)[:3] # ['odir/app/data/audio/d/1574333557263758/m/Ctor.json', # 'odir/app/data/audio/d/1574333557263758/m/intensity.json', # 'odir/app/data/audio/d/1574288084739961/m/Ctor.json']
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class
dol.zipfiledol.
ZipStore
(zip_filepath, compression=8, allow_overwrites=True, pwd=None)[source]¶ Zip read and writing. When you want to read zips, there’s the FilesOfZip, ZipReader, or ZipFilesReader we know and love.
Sometimes though, you want to write to zips too. For this, we have ZipStore.
Since ZipStore can write to a zip, it’s read functionality is not going to assume static data, and cache things, as your favorite zip readers did. This, and the acrobatics need to disguise the weird zipfile into something more… key-value natural, makes for a not so efficient store, out of the box.
- I advise using one of the zip readers if all you need to do is read, or subclassing or
wrapping ZipStore with caching layers if it is appropriate to you.
Let’s verify that a ZipStore can indeed write data. First, we’ll set things up!
>>> from tempfile import gettempdir >>> import os >>> >>> rootdir = gettempdir() >>> >>> # preparation >>> test_zipfile = os.path.join(rootdir, 'zipstore_test_file.zip') >>> if os.path.isfile(test_zipfile): ... os.remove(test_zipfile) >>> assert not os.path.isfile(test_zipfile)
Okay, test_zipfile doesn’t exist (but will soon…)
>>> z = ZipStore(test_zipfile)
See that the file still doesn’t exist (it will only be created when we start writing)
>>> assert not os.path.isfile(test_zipfile) >>> list(z) # z "is" empty (which makes sense?) []
Now let’s write something interesting (notice, it has to be in bytes):
>>> z['foo'] = b'bar' >>> list(z) # now we have something in z ['foo'] >>> z['foo'] # and that thing is what we put there b'bar'
And indeed we have a zip file now:
>>> assert os.path.isfile(test_zipfile)
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dol.zipfiledol.
file_or_folder_to_zip_file
(src_path: str, zip_filepath=None, filename=None, *, compression=8, allow_overwrites=True, pwd=None)[source]¶ Zip input bytes and save to a single-file zip file.
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dol.zipfiledol.
if_i_zipped_stats
(b: bytes)[source]¶ Compress and decompress bytes with four different methods and return a dictionary of (size and time) stats.
>>> b = b'x' * 1000 + b'y' * 1000 # 2000 (quite compressible) bytes >>> if_i_zipped_stats(b) {'uncompressed': {'bytes': 2000, 'comp_time': 0, 'uncomp_time': 0}, 'deflated': {'bytes': 137, 'comp_time': 0.00015592575073242188, 'uncomp_time': 0.00012612342834472656}, 'bzip2': {'bytes': 221, 'comp_time': 0.0013129711151123047, 'uncomp_time': 0.0011119842529296875}, 'lzma': {'bytes': 206, 'comp_time': 0.0058901309967041016, 'uncomp_time': 0.0005228519439697266}}
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dol.zipfiledol.
mk_flatzips_store
(dir_of_zips, zip_pair_path_preproc=<built-in function sorted>, mk_store=<class 'dol.zipfiledol.FlatZipFilesReader'>, **extra_mk_store_kwargs)[source]¶ A store so that you can work with a folder that has a bunch of zip files, as if they’ve all been extracted in the same folder. Note that zip_pair_path_preproc can be used to control how to resolve key conflicts (i.e. when you get two different zip files that have a same path in their contents). The last path encountered by zip_pair_path_preproc(zip_path_pairs) is the one that will be used, so one should make zip_pair_path_preproc act accordingly.
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dol.zipfiledol.
remove_mac_junk_from_zip
(zip_source, *, keys_to_be_removed: Union[Callable[[str], bool], Iterable[str]] = <function is_a_mac_junk_path>, ask_before_before_deleting=False)¶ Removes mac junk keys from zip
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dol.zipfiledol.
remove_some_entries_from_zip
(zip_source, keys_to_be_removed: Union[Callable[[str], bool], Iterable[str]], ask_before_before_deleting=True)[source]¶ Removes specific keys from a zip file.
- Parameters
zip_source – zip filepath, bytes, or whatever a
ZipStore
can takekeys_to_be_removed – An iterable of keys or a boolean filter function
ask_before_before_deleting – True (default) if the user should be presented with the keys first, and asked permission to delete.
- Returns
The ZipStore (in case you want to do further work with it)
Tip: If you want to delete with no questions asked, use currying:
>>> from functools import partial >>> rm_keys_without_asking = partial( ... remove_some_entries_from_zip, ... ask_before_before_deleting=False ... )
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dol.zipfiledol.
to_zip_file
(b: Union[bytes, str], zip_filepath, filename=None, *, compression=8, allow_overwrites=True, pwd=None, encoding='utf-8')[source]¶ Zip input bytes and save to a single-file zip file.
- Parameters
b – Input bytes or string
zip_filepath – zip filepath to save the zipped input to
filename – The name/path of the zip entry we want to save to
encoding – In case the input is str, the encoding to use to convert to bytes
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dol.zipfiledol.
to_zipped_bytes
(b: Union[bytes, str], filename='some_bytes', *, compression=8, allowZip64=True, compresslevel=None, strict_timestamps=True, encoding='utf-8') → bytes[source]¶ Compress input bytes, returning the compressed bytes
>>> b = b'x' * 1000 + b'y' * 1000 # 2000 (quite compressible) bytes >>> len(b) 2000 >>> >>> zipped_bytes = to_zipped_bytes(b) >>> # Note: Compression details will be system dependent >>> len(zipped_bytes) 137 >>> unzipped_bytes = zipped_bytes_to_bytes(zipped_bytes) >>> unzipped_bytes == b # verify that unzipped bytes are the same as the original True >>> >>> from dol.zipfiledol import compression_methods >>> >>> zipped_bytes = to_zipped_bytes(b, compression=compression_methods['bzip2']) >>> # Note: Compression details will be system dependent >>> len(zipped_bytes) 221 >>> unzipped_bytes = zipped_bytes_to_bytes(zipped_bytes) >>> unzipped_bytes == b # verify that unzipped bytes are the same as the original True